- recipe curare
A Customizable and Reproducible Analysis Pipeline for RNA-Seq Experiments.
- Homepage:
- License:
GPL3 / GPL3
- Recipe:
Curare is a freely available analysis pipeline for reproducible, high-throughput, bacterial RNA-Seq experiments. Define standardized pipelines customized for your specific workflow without the necessity of installing all the tools by yourself. Curare is implemented in Python and uses the power of Snakemake and Conda to build and execute the defined workflows. Its modulized structure and the simplicity of Snakemake enables developers to create new and advanced workflow steps.
- package curare¶
- versions:
0.6.0-0,0.5.1-0,0.5.0-0,0.4.5-0,0.4.4-0,0.4.3-0- depends biopython:
1.83.*- depends docopt:
0.6.2.*- depends mamba:
1.5.3.*- depends progressbar2:
4.3.2.*- depends python:
3.10.*- depends pyyaml:
6.0.*- depends snakemake:
7.32.3.*- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install curare and update with:: mamba update curare
To create a new environment, run:
mamba create --name myenvname curare
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/curare:<tag> (see `curare/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/curare/README.html)
