recipe cured

Classification Using Restriction Enzyme Diagnostics

Homepage:

https://github.com/microbialARC/CURED

License:

GPL / GPLv3

Recipe:

/cured/meta.yaml

package cured

versions:

1.05-0

depends biopython:

1.82

depends blast:

2.15.0

depends bwa:

0.7.17

depends mlst:

2.23.0

depends ncbi-datasets-cli:

15.28.0

depends python:

3.10.13

depends samtools:

1.18

depends unitig-caller:

1.3.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cured

and update with::

   mamba update cured

To create a new environment, run:

mamba create --name myenvname cured

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cured:<tag>

(see `cured/tags`_ for valid values for ``<tag>``)

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