recipe curesim

CuReSim (Customized Read Simulator) is a customized tool which generates synthetic New-Generation Sequencing reads, supporting read simulation for major letter-base sequencing platforms..

Homepage:

http://www.pegase-biosciences.com/curesim-a-customized-read-simulator/

License:

unknown

Recipe:

/curesim/meta.yaml

package curesim

(downloads) docker_curesim

versions:

1.3-3,  1.3-2,  1.3-1,  1.3-0

depends coreutils:

depends openjdk:

>=8

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install curesim

and update with::

   mamba update curesim

To create a new environment, run:

mamba create --name myenvname curesim

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/curesim:<tag>

(see `curesim/tags`_ for valid values for ``<tag>``)

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