recipe customprodb

Generate customized protein sequence database from RNA-Seq data for proteomics search

Homepage

http://bioconductor.org/packages/release/bioc/html/customProDB.html

License

Artistic-2.0

Recipe

/customprodb/meta.yaml

package bioconductor-customprodb

Versions

1.22.0-0, 1.14.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biomart >=2.38.0,<2.39.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-rtracklayer >=1.42.0,<1.43.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-variantannotation >=1.28.0,<1.29.0

• r-ahocorasicktrie

• r-base >=3.5.1,<3.5.2.0a0

• r-dbi

• r-plyr

• r-rcurl

• r-rsqlite

• r-stringr

Required By

• bioconductor-pga

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-customprodb

and update with:

conda update bioconductor-customprodb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-customprodb:<tag>

(see bioconductor-customprodb/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-customprodb/README.html)