recipe customprodb

Generate customized protein sequence database from RNA-Seq data for proteomics search

Homepage

http://bioconductor.org/packages/release/bioc/html/customProDB.html

License

Artistic-2.0

Recipe

/customprodb/meta.yaml

package bioconductor-customprodb

Versions

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.14.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-variantannotation >=1.34.0,<1.35.0

• r-ahocorasicktrie

• r-base >=4.0,<4.1.0a0

• r-dbi

• r-plyr

• r-rcurl

• r-rsqlite

• r-stringr

Required By

• bioconductor-pga

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-customprodb

and update with:

conda update bioconductor-customprodb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-customprodb:<tag>

(see bioconductor-customprodb/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-customprodb/README.html)