- recipe customprodb
Generate customized protein sequence database from RNA-Seq data for proteomics search
- Homepage:
http://bioconductor.org/packages/release/bioc/html/customProDB.html
- License:
Artistic-2.0
- Recipe:
- package bioconductor-customprodb¶
-
- Versions:
1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.0-0
,1.14.0-0
- Depends:
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-customprodb
and update with:
conda update bioconductor-customprodb
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-customprodb:<tag>
(see bioconductor-customprodb/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-customprodb/README.html)