recipe cutefc

Regenotyping structural variants through an accurate and efficient force-calling method

Homepage:

https://github.com/tjiangHIT/cuteFC

License:

MIT

Recipe:

/cutefc/meta.yaml

package cutefc

versions:

1.0.0-0

depends biopython:

depends cigar:

depends numpy:

depends pysam:

depends python:

>=3

depends pyvcf3:

depends scikit-learn:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cutefc

and update with::

   mamba update cutefc

To create a new environment, run:

mamba create --name myenvname cutefc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cutefc:<tag>

(see `cutefc/tags`_ for valid values for ``<tag>``)

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