recipe cwl2wdl

Proof of concept converter from Common Workflow Language (CWL) to the Broad Institute's Workflow Definition Language (WDL).

Homepage:

https://github.com/adamstruck/cwl2wdl

License:

MIT

Recipe:

/cwl2wdl/meta.yaml

package cwl2wdl

(downloads) docker_cwl2wdl

versions:

0.1dev44-2,  0.1dev44-1,  0.1dev44-0,  0.1dev37-0

depends python:

depends pyyaml:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cwl2wdl

and update with::

   mamba update cwl2wdl

To create a new environment, run:

mamba create --name myenvname cwl2wdl

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cwl2wdl:<tag>

(see `cwl2wdl/tags`_ for valid values for ``<tag>``)

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Link to this page

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