recipe cycle_finder

A de novo analysis tool for tandem and interspersed repeats based on cycle-finding

Homepage:

https://github.com/rkajitani/cycle_finder

License:

GPL / GPL-3.0

Recipe:

/cycle_finder/meta.yaml

package cycle_finder

versions:

1.0.0-0

depends _openmp_mutex:

>=4.5

depends blast:

depends bzip2:

depends cd-hit:

depends gzip:

depends jellyfish:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends openmp:

depends trf:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cycle_finder

and update with::

   mamba update cycle_finder

To create a new environment, run:

mamba create --name myenvname cycle_finder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cycle_finder:<tag>

(see `cycle_finder/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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