recipe cyrcular

Tool for calling circles from nanopore reads

Homepage:

https://github.com/tedil/cyrcular

License:

MIT / MIT

Recipe:

/cyrcular/meta.yaml

package cyrcular

versions:

0.3.0-1,  0.3.0-0

depends bzip2:

>=1.0.8,<2.0a0

depends gsl:

>=2.7,<2.8.0a0

depends libcblas:

>=3.9.0,<4.0a0

depends libgcc:

>=13

depends liblzma:

>=5.6.3,<6.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends openssl:

>=3.4.0,<4.0a0

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cyrcular

and update with::

   mamba update cyrcular

To create a new environment, run:

mamba create --name myenvname cyrcular

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cyrcular:<tag>

(see `cyrcular/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cyrcular/README.html)