recipe cytocad

Large copy-number variation detector with low-depth whole-genome sequencing data

Homepage:

https://github.com/cytham/cytocad

License:

GPL3 / GPL-3.0-or-later

Recipe:

/cytocad/meta.yaml

package cytocad

Versions:

1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0

Depends:

• bedtools >=2.26.0

• libgcc-ng >=12

• librsvg >=2.50.3

• matplotlib-base >=2.2.3

• numpy >=1.17.3

• pybedtools >=0.8.0

• pysam >=0.15.3

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• ruptures >=1.1.3

• samtools >=1.3

• scipy >=1.2.1

• tagore >=1.1.0

Required By:

• nanovar

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cytocad

and update with:

conda update cytocad

or use the docker container:

docker pull quay.io/biocontainers/cytocad:<tag>

(see cytocad/tags for valid values for <tag>)

Download stats

Link to this page

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