- recipe cytocad
Large copy-number variation detector with low-depth whole-genome sequencing data
- Homepage:
- License:
GPL3 / GPL-3.0-or-later
- Recipe:
- package cytocad¶
-
- Versions:
1.0.3-2
,1.0.3-1
,1.0.3-0
,1.0.2-0
,1.0.1-0
- Depends:
bedtools
>=2.26.0
libgcc-ng
>=12
librsvg
>=2.50.3
matplotlib-base
>=2.2.3
numpy
>=1.17.3
pybedtools
>=0.8.0
pysam
>=0.15.3
python
>=3.10,<3.11.0a0
python_abi
3.10.* *_cp310
ruptures
>=1.1.3
samtools
>=1.3
scipy
>=1.2.1
tagore
>=1.1.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install cytocad
and update with:
conda update cytocad
or use the docker container:
docker pull quay.io/biocontainers/cytocad:<tag>
(see cytocad/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/cytocad/README.html)