recipe cytosnake

Orchestrating high-dimensional cell morphology data processing pipelines

Homepage:

https://github.com/WayScience/CytoSnake

Documentation:

https://cytosnake.readthedocs.io/

License:

CC-BY-4.0

Recipe:

/cytosnake/meta.yaml

package cytosnake

versions:

0.0.2-0

depends mamba:

>=1.5.0

depends numpy:

>=1.20

depends pip:

depends pytest:

>=7.0

depends python:

3.10.*

depends pyyaml:

>=6.0.0

depends snakemake:

>=7.32

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cytosnake

and update with::

   mamba update cytosnake

To create a new environment, run:

mamba create --name myenvname cytosnake

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cytosnake:<tag>

(see `cytosnake/tags`_ for valid values for ``<tag>``)

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