cyvcf2

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A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files

Home https://github.com/brentp/cyvcf2
Versions 0.2.0, 0.2.2, 0.2.3, 0.2.4, 0.2.5, 0.2.6, 0.2.8, 0.3.0, 0.3.2, 0.4.0, 0.4.1, 0.4.2, 0.5.0, 0.5.1, 0.5.3, 0.5.5, 0.6.5, 0.6.6a, 0.7.2, 0.8.0
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cyvcf2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cyvcf2

and update with:

conda update cyvcf2

docker

A Docker container is available at https://quay.io/repository/biocontainers/cyvcf2.