recipe dagchainer

DAGchainer identifies syntenic regions.

Homepage:

https://github.com/kullrich/dagchainer

License:

MIT

Recipe:

/dagchainer/meta.yaml

Links:

doi: 10.1093/bioinformatics/bth397

DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).

package dagchainer

versions:

r120920-3,  r120920-2,  r120920-1,  r120920-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends perl-carp:

depends perl-data-dumper:

depends perl-getopt-long:

depends perl-local-lib:

depends perl-storable:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dagchainer

and update with::

   mamba update dagchainer

To create a new environment, run:

mamba create --name myenvname dagchainer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dagchainer:<tag>

(see `dagchainer/tags`_ for valid values for ``<tag>``)

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