recipe dammet

Software to reconstruct methylomes from HTS data from ancient specimen

Homepage:

https://github.com/KHanghoj/DamMet

License:

MIT license

Recipe:

/dammet/meta.yaml

package dammet

versions:

1.0.4-0,  1.0.1a-6,  1.0.1a-5,  1.0.1a-4,  1.0.1a-3,  1.0.1a-2,  1.0.1a-1,  1.0.1a-0

depends bzip2:

>=1.0.8,<2.0a0

depends libcurl:

>=7.82.0,<8.0a0

depends libcxx:

>=12.0.1

depends libzlib:

>=1.2.11,<1.3.0a0

depends openssl:

>=1.1.1n,<1.1.2a

depends xz:

>=5.2.5,<5.3.0a0

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dammet

and update with::

   mamba update dammet

To create a new environment, run:

mamba create --name myenvname dammet

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dammet:<tag>

(see `dammet/tags`_ for valid values for ``<tag>``)

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