recipe dampa

DAMPA designs probes for use in targetted metagenomics. It leverages pangenome graphs to increase speed and accuracy.

Homepage:

https://github.com/MultipathogenGenomics/dampa

License:

MIT

Recipe:

/dampa/meta.yaml

package dampa

versions:

0.1.2-0,  0.1.1-0,  0.1.0-0

depends biopython:

>=1.84

depends blast:

>=2.16

depends matplotlib-base:

>=3.10

depends pandas:

>=2.0

depends python:

>=3.8

depends seaborn:

>=0.13

depends vsearch:

>=2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dampa

and update with::

   mamba update dampa

To create a new environment, run:

mamba create --name myenvname dampa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dampa:<tag>

(see `dampa/tags`_ for valid values for ``<tag>``)

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