recipe das_tool

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.

Homepage:

https://github.com/cmks/DAS_Tool

License:

BSD

Recipe:

/das_tool/meta.yaml

Links:

doi: 10.1038/s41564-018-0171-1

DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.

package das_tool

Versions:

1.1.6-0,  1.1.5-0,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-3, 

1.1.6-0,  1.1.5-0,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-3,  1.1.1-2,  1.1.1-1,  1.1.1-0

Depends:

• blast >=2.7.1

• diamond >=0.9.14

• gawk

• prodigal >=2.6.3

• pullseq >=1.0.2

• r-base >=4.2,<4.3.0a0

• r-data.table >=1.9.6

• r-docopt >=0.7.1

• r-magrittr >=2.0.1

• ruby >=2.4.4

• unzip

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install das_tool

and update with:

conda update das_tool

or use the docker container:

docker pull quay.io/biocontainers/das_tool:<tag>

(see das_tool/tags for valid values for <tag>)

Download stats

Link to this page

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