recipe das_tool

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.

Homepage:

https://github.com/cmks/DAS_Tool

License:

BSD

Recipe:

/das_tool/meta.yaml

Links:

doi: 10.1038/s41564-018-0171-1

DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.

package das_tool

versions:

1.1.7-0,  1.1.6-0,  1.1.5-0,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-2,  1.1.2-1,  1.1.2-0, 

1.1.7-0,  1.1.6-0,  1.1.5-0,  1.1.4-1,  1.1.4-0,  1.1.3-0,  1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-3,  1.1.1-2,  1.1.1-1,  1.1.1-0

depends blast:

>=2.7.1

depends diamond:

>=0.9.14

depends gawk:

depends prodigal:

>=2.6.3

depends pullseq:

>=1.0.2

depends r-base:

>=4.3,<4.4.0a0

depends r-data.table:

>=1.9.6

depends r-docopt:

>=0.7.1

depends r-magrittr:

>=2.0.1

depends ruby:

>=2.4.4

depends unzip:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install das_tool

and update with::

   mamba update das_tool

To create a new environment, run:

mamba create --name myenvname das_tool

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/das_tool:<tag>

(see `das_tool/tags`_ for valid values for ``<tag>``)

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