recipe dashing2

A fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.

Homepage:

https://github.com/dnbaker/dashing2

Documentation:

https://github.com/dnbaker/dashing2/blob/v2.1.20/README.md

License:

MIT / MIT

Recipe:

/dashing2/meta.yaml

Links:

doi: 10.1101/501726

package dashing2

versions:

2.1.20-0

depends _openmp_mutex:

>=4.5

depends fmt:

>=10.2.1,<11.0a0

depends libgcc:

>=13

depends libgomp:

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zstd:

>=1.5.7,<1.6.0a0

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dashing2

and update with::

   mamba update dashing2

To create a new environment, run:

mamba create --name myenvname dashing2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dashing2:<tag>

(see `dashing2/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dashing2/README.html)