recipe dastk

Differential ATAC-seq toolkit

Homepage:

https://github.com/Dowell-Lab/DAStk

License:

BSD / BSD-3

Recipe:

/dastk/meta.yaml

Links:

doi: 10.3390/molecules23051136, biotools: DAStk_-_Differential_ATAC-seq_toolkit

package dastk

versions:

1.0.1-0,  1.0.0-0

depends adjusttext:

depends matplotlib-base:

depends matplotlib-venn:

depends networkx:

>=2

depends pandas:

depends pybedtools:

depends python:

depends scikit-learn:

depends scipy:

depends upsetplot:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dastk

and update with::

   mamba update dastk

To create a new environment, run:

mamba create --name myenvname dastk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dastk:<tag>

(see `dastk/tags`_ for valid values for ``<tag>``)

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