recipe dawg

DNA Assembly with Gaps (Dawg) is an application designed to simulate the evolution of recombinant DNA sequences in continuous time based on the robust general time reversible model with gamma and invariant rate heterogeneity and a novel length-dependent model of gap formation.

Homepage:

https://github.com/reedacartwright/dawg

License:

GPL-2

Recipe:

/dawg/meta.yaml

package dawg

(downloads) docker_dawg

versions:

2.0.beta1-8,  2.0.beta1-7,  2.0.beta1-6,  2.0.beta1-5,  2.0.beta1-4,  2.0.beta1-3,  2.0.beta1-2,  2.0.beta1-1,  2.0.beta1-0

depends boost-cpp:

depends gsl:

>=2.7,<2.8.0a0

depends libcxx:

>=16

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dawg

and update with::

   mamba update dawg

To create a new environment, run:

mamba create --name myenvname dawg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dawg:<tag>

(see `dawg/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dawg/README.html)