recipe dbcanlight

A lightweight rewrite of run_dbcan

Homepage:

https://github.com/chtsai0105/dbcanLight/tree/main

License:

MIT

Recipe:

/dbcanlight/meta.yaml

dbcanlight uses the hmmsearch module in pyhmmer to discover CAZymes and potential substrates from a peptide sequences.

package dbcanlight

(downloads) docker_dbcanlight

versions:

1.0.2-0,  1.0.1-0,  1.0.0-0

depends biopython:

>=1.79

depends importlib_metadata:

depends pyhmmer:

>=0.10.2

depends python:

>=3.7

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dbcanlight

and update with::

   mamba update dbcanlight

To create a new environment, run:

mamba create --name myenvname dbcanlight

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dbcanlight:<tag>

(see `dbcanlight/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dbcanlight/README.html)