recipe dbg2olc

Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

Homepage:

https://github.com/yechengxi/DBG2OLC

License:

unknown

Recipe:

/dbg2olc/meta.yaml

package dbg2olc

versions:

20200723-2,  20200723-1,  20200723-0,  20180222-3,  20180222-2,  20180222-1,  20180222-0,  20160205-1,  20160205-0

depends assemblyutility:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends sparc:

depends sparseassembler:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dbg2olc

and update with::

   mamba update dbg2olc

To create a new environment, run:

mamba create --name myenvname dbg2olc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dbg2olc:<tag>

(see `dbg2olc/tags`_ for valid values for ``<tag>``)

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