recipe ddocent

dDocent is an interactive bash wrapper to QC, assemble, map, and call SNPs from all types of RAD data

Homepage

http://ddocent.com

License

The MIT License (MIT)

Recipe

/ddocent/meta.yaml

package ddocent

(downloads) docker_ddocent

Versions

2.7.8-0, 2.7.7-0, 2.7.6-0, 2.6.0-2, 2.6.0-1, 2.6.0-0, 2.5.6-0, 2.5.5-0, 2.5.2-1, 2.5.2-0, 2.5.1-0, 2.3.8-0, 2.2.25-2, 2.2.25-1, 2.2.25-0, 2.2.20-0, 2.2.19-0, 2.2.16-0, 2.2.15-0, 2.2.13-0, 2.2.8-0, 2.2.7-0, 2.2.4-0, 2.1-0

Depends bedtools

>=2.26.0

Depends bwa

Depends cd-hit

Depends coreutils

>=8.22

Depends curl

Depends fastp

Depends freebayes

Depends gnuplot

Depends grep

Depends libgcc-ng

>=7.3.0

Depends mawk

Depends parallel

Depends pear

Depends rainbow

Depends samtools

Depends seqtk

>=1.3

Depends unzip

Depends vcflib

Depends vcftools

>=0.1.15

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ddocent

and update with:

conda update ddocent

or use the docker container:

docker pull quay.io/biocontainers/ddocent:<tag>

(see ddocent/tags for valid values for <tag>)