recipe ddocent

dDocent is an interactive bash wrapper to QC, assemble, map, and call SNPs from all types of RAD data

Homepage:

http://ddocent.com

License:

The MIT License (MIT)

Recipe:

/ddocent/meta.yaml

package ddocent

Versions:

2.9.4-0,  2.8.13-3,  2.8.13-2,  2.8.13-1,  2.8.13-0,  2.8.12-0,  2.7.8-4,  2.7.8-3,  2.7.8-2, 

2.9.4-0,  2.8.13-3,  2.8.13-2,  2.8.13-1,  2.8.13-0,  2.8.12-0,  2.7.8-4,  2.7.8-3,  2.7.8-2,  2.7.8-1,  2.7.8-0,  2.7.7-0,  2.7.6-0,  2.6.0-2,  2.6.0-1,  2.6.0-0,  2.5.6-0,  2.5.5-0,  2.5.2-1,  2.5.2-0,  2.5.1-0,  2.3.8-0,  2.2.25-2,  2.2.25-1,  2.2.25-0,  2.2.20-0,  2.2.19-0,  2.2.16-0,  2.2.15-0,  2.2.13-0,  2.2.8-0,  2.2.7-0,  2.2.4-0,  2.1-0

Depends:

• bedops

• bedtools >=2.26.0

• bwa >=0.7.13

• cd-hit

• coreutils >=8.22

• curl

• fastp >=0.20.0

• freebayes >=1

• gnuplot

• grep

• mawk

• parallel

• pear

• rainbow

• samtools >=1.3

• sed

• seqtk >=1.3

• unzip

• vcflib >=0.1.11

• vcftools >=0.1.15

Required By:

• rad_haplotyper

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ddocent

and update with:

conda update ddocent

or use the docker container:

docker pull quay.io/biocontainers/ddocent:<tag>

(see ddocent/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ddocent/README.html)