recipe debarcer

A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes.

Homepage:

https://github.com/oicr-gsi/debarcer

License:

MIT

Recipe:

/debarcer/meta.yaml

package debarcer

versions:

2.1.4-2,  2.1.4-1,  2.1.4-0,  2.1.3-0,  2.1.1-0

depends matplotlib-base:

>=3.1,<=3.3

depends mistune:

>=0.8,<2

depends networkx:

2.4.*

depends numpy:

>=1.14

depends pandas:

>=0.22

depends pygal:

>=2.4

depends pysam:

>=0.14

depends python:

>=3.6

depends pyyaml:

>=5.1

depends scipy:

>=1.1,<=1.2

depends seaborn:

>=0.9,<=0.10

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install debarcer

and update with::

   mamba update debarcer

To create a new environment, run:

mamba create --name myenvname debarcer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/debarcer:<tag>

(see `debarcer/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/debarcer/README.html)