recipe decom

decOM: Microbial source tracking of ancient oral samples using k-mers.

Homepage:

https://github.com/CamilaDuitama/decOM

License:

MIT / MIT

Recipe:

/decom/meta.yaml

decOM is a similarity-based microbial source tracking tool for contamination assessment of ancient oral samples using k-mer-based methods.

package decom

(downloads) docker_decom

versions:

0.0.32-2,  0.0.32-1,  0.0.32-0

depends colorama:

depends dask:

>=2021.12.0

depends git:

depends importlib_resources:

>=5.4.0

depends kmtricks:

>=1.4.0

depends numpy:

>=1.7

depends pandas:

depends plotly:

>=5.5.0

depends python:

>=3.9,<3.13

depends python-kaleido:

depends setuptools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install decom

and update with::

   mamba update decom

To create a new environment, run:

mamba create --name myenvname decom

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/decom:<tag>

(see `decom/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/decom/README.html)