recipe deepacvir

Detecting novel human viruses from DNA reads with reverse-complement neural networks.

Homepage:

https://gitlab.com/rki_bioinformatics/DeePaC

Documentation:

https://rki_bioinformatics.gitlab.io/DeePaC/

Developer docs:

https://gitlab.com/JakubBartoszewicz/deepac-vir

License:

MIT / MIT

Recipe:

/deepacvir/meta.yaml

package deepacvir

(downloads) docker_deepacvir

versions:

0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.0-0

depends deepac:

>=0.11.0

depends numpy:

>=1.17

depends python:

>=3.6

depends scikit-learn:

>=0.22.1

depends tensorflow:

>=2.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install deepacvir

and update with::

   mamba update deepacvir

To create a new environment, run:

mamba create --name myenvname deepacvir

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/deepacvir:<tag>

(see `deepacvir/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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