recipe deeparg

A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes

Homepage:

https://bitbucket.org/gusphdproj/deeparg-ss/

License:

MIT / MIT

Recipe:

/deeparg/meta.yaml

package deeparg

Versions:

1.0.2-1,  1.0.2-0

Depends:

• biopython >=1.68

• diamond

• ete3 >=3.1.2

• joblib >=0.14.1

• lasagne >=0.1

• nolearn >=0.6.1

• numpy >=1.16

• python <3

• requests >=1.15.1

• scikit-learn >=0.19.2

• scipy >=1.2.1

• theano >=0.8.2

• tqdm >=4.62.3

• wget >=1.20.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install deeparg

and update with:

conda update deeparg

or use the docker container:

docker pull quay.io/biocontainers/deeparg:<tag>

(see deeparg/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/deeparg/README.html)