recipe deepmedic

Efficient Multi-Scale 3D Convolutional Neural Network for Brain Lesion Segmentation.

Homepage:

https://github.com/Kamnitsask/deepmedic

License:

BSD

Recipe:

/deepmedic/meta.yaml

package deepmedic

versions:

0.6.1-1,  0.6.1-0,  0.6-0,  0.5.4-0

depends nibabel:

depends numpy:

depends pp:

depends python:

<3

depends scipy:

depends six:

depends theano:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install deepmedic

and update with::

   mamba update deepmedic

To create a new environment, run:

mamba create --name myenvname deepmedic

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/deepmedic:<tag>

(see `deepmedic/tags`_ for valid values for ``<tag>``)

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