recipe deepstats

A statistical and dataviz toolbox for deeptools, genomic signals, and more.

Homepage:

https://github.com/gtrichard/deepStats

License:

GPL3

Recipe:

/deepstats/meta.yaml

Links:

doi: 10.5281/zenodo.3336593

package deepstats

versions:

0.4-1,  0.4-0,  0.3.1-0,  0.3-0,  0.2-0

depends bioconductor-iranges:

depends bioconductor-rsamtools:

depends r-argparse:

depends r-base:

>=3.5.1

depends r-boot:

depends r-cowplot:

depends r-dichromat:

depends r-essentials:

depends r-ggplot2:

depends r-optparse:

depends r-purrr:

depends r-seqinr:

depends r-showtext:

depends r-stringr:

depends r-tidyverse:

depends r-vroom:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install deepstats

and update with::

   mamba update deepstats

To create a new environment, run:

mamba create --name myenvname deepstats

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/deepstats:<tag>

(see `deepstats/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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