recipe deepsvr

DeepSVR stands for deep somatic variant refinement. It uses deep learning to classify real somatic and anomalous variants in paired tumor sequencing data.

Homepage:

https://github.com/griffithlab/deepsvr

License:

MIT

Recipe:

/deepsvr/meta.yaml

package deepsvr

Versions:

0.1.0-0

Depends:

• bam-readcount

• click

• convert_zero_one_based

• h5py

• keras 2.0.4

• matplotlib

• numpy 1.12.1

• pandas 0.20.3

• python 3.6.1

• scikit-learn

• seaborn

• tensorflow <=1.0.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install deepsvr

and update with:

conda update deepsvr

or use the docker container:

docker pull quay.io/biocontainers/deepsvr:<tag>

(see deepsvr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/deepsvr/README.html)