- recipe deeptools
A set of user-friendly tools for normalization and visualzation of deep-sequencing data
- Homepage:
- License:
GPL3
- Recipe:
- Links:
biotools: deeptools, doi: 10.1093/nar/gkw257, usegalaxy-eu: deeptools_plot_heatmap
- package deeptools¶
-
- Versions:
3.5.2-0
,3.5.1-1
,3.5.1-0
,3.5.0-0
,3.4.3-0
,3.4.2-0
,3.4.1-0
,3.4.0-0
,3.3.2-1
,3.5.2-0
,3.5.1-1
,3.5.1-0
,3.5.0-0
,3.4.3-0
,3.4.2-0
,3.4.1-0
,3.4.0-0
,3.3.2-1
,3.3.2-0
,3.3.1-0
,3.3.0-0
,3.2.1-0
,3.2.0-0
,3.1.3-1
,3.1.3-0
,3.1.2-0
,3.1.1-0
,3.1.0-0
,3.0.2-0
,3.0.1-1
,3.0.1-0
,3.0.0-0
,2.5.7-0
,2.5.6-0
,2.5.5-0
,2.5.4-0
,2.5.3-0
,2.5.2-0
,2.5.1-0
,2.5.0-0
,2.4.3-0
,2.4.2-0
,2.4.1-1
,2.4.1-0
,2.4.0-0
,2.3.6-2
,2.3.6-1
,2.3.5-2
,2.3.5-1
,2.3.5-0
,2.3.4-0
,2.3.3-0
,2.3.2-0
,2.3.1-0
,2.2.4-0
,2.2.3-0
,2.2.2-0
,2.2.1-0
,2.2.0-0
,2.1.0-0
,2.0.1-0
,2.0.0-0
,1.5.9.1-0
,1.5.8.2-0
- Depends:
deeptoolsintervals
>=0.1.8
matplotlib-base
>=3.1.0
numpy
>=1.9.0,<1.24
plotly
>=2.0.0
py2bit
>=0.2.0
pybigwig
>=0.2.3
pysam
>=0.14.0
python
>=3
scipy
>=0.17.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install deeptools
and update with:
conda update deeptools
or use the docker container:
docker pull quay.io/biocontainers/deeptools:<tag>
(see deeptools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/deeptools/README.html)