recipe defense-finder

Defense Finder: allow for a systematic search of all known anti-phage systems.

Homepage:

https://github.com/mdmparis/defense-finder

License:

GPL3 / GPL-3.0-or-later

Recipe:

/defense-finder/meta.yaml

package defense-finder

versions:

1.2.2-1,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.0.9-0

depends click:

>=8.0.3

depends colorlog:

>=6.3.0a1

depends macsyfinder:

2.1.1.*

depends pyhmmer:

depends pyrodigal:

depends python:

>=3.7

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install defense-finder

and update with::

   mamba update defense-finder

To create a new environment, run:

mamba create --name myenvname defense-finder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/defense-finder:<tag>

(see `defense-finder/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/defense-finder/README.html)