recipe degenotate

Annotation of degeneracy of sites in coding regions of a genome

Homepage:

https://github.com/harvardinformatics/degenotate

License:

MIT

Recipe:

/degenotate/meta.yaml

Annotation of degeneracy of sites in coding regions of a genome

package degenotate

versions:

1.3-0,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.3-0,  1.1.2-0,  1.1.1-0, 

1.3-0,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

depends networkx:

depends pysam:

depends python:

>=3.10

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install degenotate

and update with::

   mamba update degenotate

To create a new environment, run:

mamba create --name myenvname degenotate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/degenotate:<tag>

(see `degenotate/tags`_ for valid values for ``<tag>``)

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