recipe demultiplex

Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes

Homepage:

https://github.com/jfjlaros/demultiplex

Documentation:

https://demultiplex.readthedocs.io/en/latest/index.html

License:

MIT / MIT

Recipe:

/demultiplex/meta.yaml

package demultiplex

versions:

1.2.2-0

depends biopython:

>=1.72

depends dict-trie:

>=1.0.1

depends fastools:

>=1.1.0

depends jit-open:

>=1.0.1

depends python:

>=3.6

depends tssv:

>=1.1.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install demultiplex

and update with::

   mamba update demultiplex

To create a new environment, run:

mamba create --name myenvname demultiplex

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/demultiplex:<tag>

(see `demultiplex/tags`_ for valid values for ``<tag>``)

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