recipe demultiplexer

python tool to demultiplex illumina reads tagged with the leeselab tagging scheme

Homepage:

https://github.com/DominikBuchner/demultiplexer

License:

MIT

Recipe:

/demultiplexer/meta.yaml

package demultiplexer

versions:

1.2.1-0,  1.1.2-0,  1.1.0-0

depends biopython:

>=1.78

depends joblib:

>=0.16.0

depends openpyxl:

>=3.0.3

depends psutil:

>=5.7.3

depends pysimplegui:

>=4.19.0

depends python:

>=3.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install demultiplexer

and update with::

   mamba update demultiplexer

To create a new environment, run:

mamba create --name myenvname demultiplexer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/demultiplexer:<tag>

(see `demultiplexer/tags`_ for valid values for ``<tag>``)

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