recipe denovogear

A program to detect denovo-variants using next-generation sequencing data.

Homepage:

https://github.com/denovogear/denovogear

License:

GPL3

Recipe:

/denovogear/meta.yaml

package denovogear

versions:

1.1.1-0

depends boost:

depends eigen:

depends htslib:

depends libgcc:

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install denovogear

and update with::

   mamba update denovogear

To create a new environment, run:

mamba create --name myenvname denovogear

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/denovogear:<tag>

(see `denovogear/tags`_ for valid values for ``<tag>``)

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