recipe dgenies

Dotplot large Genomes in an Interactive, Efficient and Simple way

Homepage:

http://dgenies.toulouse.inrae.fr

Documentation:

http://dgenies.toulouse.inrae.fr/

Developer docs:

https://github.com/genotoul-bioinfo/dgenies

License:

GPL / GPL-3

Recipe:

/dgenies/meta.yaml

package dgenies

versions:

1.5.0-1,  1.5.0-0,  1.4.0-0,  1.3.1-1,  1.3.1-0,  1.3.0-0,  1.2.0.2-0,  1.2.0.1-0

depends biopython:

>=1.70

depends flask:

2.*

depends intervaltree:

3.*

depends jinja2:

>=2.11.3

depends markdown:

>=2.6

depends matplotlib-base:

>=2.1

depends numpy:

depends psutil:

>=5.6.6

depends python:

>=3.6

depends python-crontab:

>=2.2

depends pyyaml:

>=5.4.1

depends requests:

>=2.20.1

depends tendo:

0.2.*

depends xopen:

>=1.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dgenies

and update with::

   mamba update dgenies

To create a new environment, run:

mamba create --name myenvname dgenies

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dgenies:<tag>

(see `dgenies/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dgenies/README.html)