recipe diatracer

A diaPASEF spectrum-centric analysis tool

Homepage:

https://diatracer.nesvilab.org/

License:

Academic License

Recipe:

/diatracer/meta.yaml

Links:

doi: 10.1038/s41467-024-55448-8

diaTracer is a computational tool that enables spectrum-centric analysis of Bruker’s diaPASEF data-independent acquisition proteomics data, facilitating direct (“spectral-library free”) peptide identification and quantification

diaTracer is available freely for academic research and educational purposes only, in accordance with the terms at https://msfragger.arsci.com/diatracer/LICENSE-ACADEMIC.pdf.

package diatracer

(downloads) docker_diatracer

versions:

1.2.5-0

depends msfragger:

>=4.2

depends openjdk:

>=11

depends python_abi:

3.11.* *_cp311

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install diatracer

and update with::

   mamba update diatracer

To create a new environment, run:

mamba create --name myenvname diatracer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/diatracer:<tag>

(see `diatracer/tags`_ for valid values for ``<tag>``)

Notes

The "diatracer" command runs the diaTracer java program.

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