recipe digestiflow-demux

Digestiflow Command Line Client.

Homepage:

https://github.com/bihealth/digestiflow-demux

License:

MIT

Recipe:

/digestiflow-demux/meta.yaml

A command line client tool to perform semiautomatic demultiplexing of Illumina flowcells using data from Digestiflow Server.

package digestiflow-demux

versions:

0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.1-0,  0.3.0-0, 

0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.1-0,  0.3.0-0,  0.2.0-0,  0.1.0-0

depends attrs:

>=18.2.0

depends coloredlogs:

>=10.0

depends git:

depends python:

>=3.5

depends requests:

depends snakemake:

>=5.4.0

depends toml:

>=0.10.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install digestiflow-demux

and update with::

   mamba update digestiflow-demux

To create a new environment, run:

mamba create --name myenvname digestiflow-demux

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/digestiflow-demux:<tag>

(see `digestiflow-demux/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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