- recipe digestiflow-demux
Digestiflow Command Line Client.
A command line client tool to perform semiautomatic demultiplexing of Illumina flowcells using data from Digestiflow Server.
- package digestiflow-demux¶
- depends attrs:
- depends coloredlogs:
- depends git:
- depends python:
- depends requests:
- depends snakemake:
- depends toml:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install digestiflow-demux and update with:: mamba update digestiflow-demux
To create a new environment, run:
mamba create --name myenvname digestiflow-demux
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/digestiflow-demux:<tag> (see `digestiflow-demux/tags`_ for valid values for ``<tag>``)