recipe dimspy

Python package for data processing of direct-infusion mass spectrometry-based metabolomics and lipidomics data

Homepage:

https://github.com/computational-metabolomics/dimspy

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/dimspy/meta.yaml

package dimspy

(downloads) docker_dimspy

versions:

2.0.0-1,  2.0.0-0,  1.4.0-0,  1.3.0-0,  1.2.0-1,  1.2.0-0,  1.1.0-0,  1.0.0-0

depends fastcluster:

1.1.26

depends h5py:

2.10.0

depends mono:

5.*

depends numpy:

1.17.1

depends pandas:

0.25.0

depends pymzml:

2.4.5

depends pytables:

3.6.1

depends python:

>3.7

depends pythonnet:

2.4.0

depends scipy:

1.3.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dimspy

and update with::

   mamba update dimspy

To create a new environment, run:

mamba create --name myenvname dimspy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dimspy:<tag>

(see `dimspy/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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