recipe dinosaur

Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.

Homepage:

https://github.com/fickludd/dinosaur

License:

Apache / Apache-2.0

Recipe:

/dinosaur/meta.yaml

package dinosaur

(downloads) docker_dinosaur

versions:

1.2.0-1,  1.2.0-0,  1.1.3-0

depends openjdk:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dinosaur

and update with::

   mamba update dinosaur

To create a new environment, run:

mamba create --name myenvname dinosaur

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dinosaur:<tag>

(see `dinosaur/tags`_ for valid values for ``<tag>``)

Notes

This recipe supplies a wrapper shell script around the Dinosaur Java program. By default, Java is called without specifying heap size. If you want to overwrite it you can specify these values after calling the wrapper. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "dinosaur -Xmx4g"

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