recipe dipcall

Dipcall is a reference-based variant calling pipeline for a pair of phased haplotype assemblies.

Homepage:

https://github.com/lh3/dipcall

License:

MIT

Recipe:

/dipcall/meta.yaml

Links:

doi: 10.1038/s41592-018-0054-7

Dipcall is a reference-based variant calling pipeline for a pair of phased haplotype assemblies. It was originally developed for constructing the syndip benchmark dataset and has been applied to other phased assemblies, too. Dipcall can call small variants and long INDELs as long as they are contained in minimap2 alignment.

package dipcall

Versions:

0.3-0,  0.2-2,  0.2-1,  0.2-0

Depends:

• bedtk

• htsbox

• k8

• make

• minimap2

• perl *

• samtools

• unimap

• winnowmap

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install dipcall

and update with:

conda update dipcall

or use the docker container:

docker pull quay.io/biocontainers/dipcall:<tag>

(see dipcall/tags for valid values for <tag>)

Download stats

Link to this page

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