- recipe dipcall
Dipcall is a reference-based variant calling pipeline for a pair of phased haplotype assemblies.
Dipcall is a reference-based variant calling pipeline for a pair of phased haplotype assemblies. It was originally developed for constructing the syndip benchmark dataset and has been applied to other phased assemblies, too. Dipcall can call small variants and long INDELs as long as they are contained in minimap2 alignment.
- package dipcall¶
- Required By:
With an activated Bioconda channel (see set-up-channels), install with:
conda install dipcall
and update with:
conda update dipcall
or use the docker container:
docker pull quay.io/biocontainers/dipcall:<tag>
(see dipcall/tags for valid values for