recipe diphase

A diploid genome phasing tool

Homepage:

https://github.com/zhangjuncsu/Diphase

License:

MIT

Recipe:

/diphase/meta.yaml

package diphase

versions:

1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

depends bwa:

depends bzip2:

>=1.0.8,<2.0a0

depends libcurl:

>=7.87.0,<8.0a0

depends libdeflate:

>=1.20,<1.21.0a0

depends libgcc:

>=12

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends openssl:

>=1.1.1w,<1.1.2a

depends python:

3.9.0.*

depends samtools:

depends xz:

>=5.2.6,<6.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install diphase

and update with::

   mamba update diphase

To create a new environment, run:

mamba create --name myenvname diphase

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/diphase:<tag>

(see `diphase/tags`_ for valid values for ``<tag>``)

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