recipe discasm

DISCASM aims to extract reads that map to reference genomes in a discordant fashion and optionally include reads that do not map to the genome at all, and perform a de novo transcriptome assembly of these reads. DISCASM relies on the output from STAR (as run via STAR-Fusion), and supports de novo transcriptome assembly using Trinity or Oases. - https://github.com/DISCASM/DISCASM/wiki

Homepage

https://github.com/DISCASM/DISCASM

License

BSD-3-Clause

Recipe

/discasm/meta.yaml

package discasm

(downloads) docker_discasm

Versions

0.1.3-0, 0.1.2-2, 0.1.2-1, 0.1.2-0

Depends oases

>=0.2

Depends perl

5.22.0*

Depends pysam

>=0.10.0

Depends python

2.7*

Depends star

>=2.4

Depends trinity

>=2.4

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install discasm

and update with:

conda update discasm

or use the docker container:

docker pull quay.io/biocontainers/discasm:<tag>

(see discasm/tags for valid values for <tag>)