DISCASM aims to extract reads that map to reference genomes in a discordant fashion and optionally include reads that do not map to the genome at all, and perform a de novo transcriptome assembly of these reads. DISCASM relies on the output from STAR (as run via STAR-Fusion), and supports de novo transcriptome assembly using Trinity or Oases. - https://github.com/DISCASM/DISCASM/wiki

Home https://github.com/DISCASM/DISCASM
Versions 0.1.2, 0.1.3
License BSD-3-Clause
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/discasm


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install discasm

and update with:

conda update discasm


A Docker container is available at https://quay.io/repository/biocontainers/discasm.