recipe discosnp

reference-free small variant caller for short read sequencing data

Homepage:

https://gatb.inria.fr/software/discosnp/

License:

GNU Affero General Public License v3.0

Recipe:

/discosnp/meta.yaml

Links:

biotools: discosnp, doi: 10.1093/nar/gkn000

package discosnp

Versions:

2.6.2-2,  2.6.2-1,  2.6.2-0,  2.6.1-0,  2.5.4-1,  2.5.4-0,  2.4.4-0,  2.4.3-2,  2.4.3-1, 

2.6.2-2,  2.6.2-1,  2.6.2-0,  2.6.1-0,  2.5.4-1,  2.5.4-0,  2.4.4-0,  2.4.3-2,  2.4.3-1,  2.4.3-0,  2.3.0-7,  2.3.0-6,  2.3.0-5,  2.3.0-4,  2.3.0-3,  2.3.0-2,  2.3.0-1,  2.3.0-0,  2.2.10-1,  2.2.10-0

Depends:

• bwa

• libcxx >=15.0.7

• libzlib >=1.2.13,<1.3.0a0

• python >=3.0

• shortreadconnector

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install discosnp

and update with:

conda update discosnp

or use the docker container:

docker pull quay.io/biocontainers/discosnp:<tag>

(see discosnp/tags for valid values for <tag>)

Download stats

Link to this page

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