recipe dnaapler

Reorients assembled microbial sequences

Homepage:

https://github.com/gbouras13/dnaapler

Documentation:

https://dnaapler.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/dnaapler/meta.yaml

package dnaapler

versions:

1.0.1-0,  1.0.0-0,  0.8.1-0,  0.8.0-0,  0.7.0-0,  0.6.0-0,  0.5.2-0,  0.5.1-0,  0.5.0-0, 

1.0.1-0,  1.0.0-0,  0.8.1-0,  0.8.0-0,  0.7.0-0,  0.6.0-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.0-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.0-0,  0.1.0-0

depends biopython:

>=1.76

depends click:

>=8.0.0

depends loguru:

>=0.5.3

depends mmseqs2:

13.45111

depends pandas:

>=1.4.2

depends pyrodigal:

>=3.0.0

depends python:

>=3.8,<4.0

depends pyyaml:

>=6.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dnaapler

and update with::

   mamba update dnaapler

To create a new environment, run:

mamba create --name myenvname dnaapler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dnaapler:<tag>

(see `dnaapler/tags`_ for valid values for ``<tag>``)

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