recipe dnacauldron

Cloning simulation for DNA assembly (Golden Gate, Gibson…)






package dnacauldron

(downloads) docker_dnacauldron



depends biopython:

depends dna_features_viewer:

depends flametree:

depends fuzzywuzzy:

depends matplotlib-base:

depends networkx:

depends numpy:

depends openpyxl:

depends pandas:

depends proglog:

depends python:

depends python-levenshtein:

depends scipy:

depends snapgene-reader:

depends xlrd:

depends xlwt:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dnacauldron

and update with::

   mamba update dnacauldron

To create a new environment, run:

mamba create --name myenvname dnacauldron

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `dnacauldron/tags`_ for valid values for ``<tag>``)

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