recipe dnaweaver

Python library to find optimal strategies for assembling large DNA constructs.

Homepage:

https://github.com/Edinburgh-Genome-Foundry/DnaWeaver/

License:

MIT

Recipe:

/dnaweaver/meta.yaml

package dnaweaver

versions:

v0.3.7-0

depends biopython:

depends blast:

depends dna_features_viewer:

depends dnachisel:

depends flametree:

depends jinja2:

depends networkx:

depends numpy:

depends pandas:

depends proglog:

depends python:

>=3.6

depends weasyprint:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dnaweaver

and update with::

   mamba update dnaweaver

To create a new environment, run:

mamba create --name myenvname dnaweaver

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dnaweaver:<tag>

(see `dnaweaver/tags`_ for valid values for ``<tag>``)

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