recipe dnmtools

dnmtools is a set of tools for analyzing DNA methylation data from bisulfite sequencing.

Homepage:

https://github.com/smithlabcode/dnmtools

Documentation:

https://dnmtools.readthedocs.io

License:

GPL3 / GPL-3.0-or-later

Recipe:

/dnmtools/meta.yaml

package dnmtools

versions:

1.4.4-0,  1.4.3-0,  1.4.2-0,  1.3.0-1,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.1.0-1,  1.1.0-0, 

1.4.4-0,  1.4.3-0,  1.4.2-0,  1.3.0-1,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.1.0-1,  1.1.0-0,  1.0.0-0

depends _openmp_mutex:

>=4.5

depends gsl:

>=2.7,<2.8.0a0

depends htslib:

>=1.21,<1.22.0a0

depends libgcc:

>=12

depends libgomp:

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dnmtools

and update with::

   mamba update dnmtools

To create a new environment, run:

mamba create --name myenvname dnmtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dnmtools:<tag>

(see `dnmtools/tags`_ for valid values for ``<tag>``)

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Link to this page

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