recipe dosage_score

Dosage-score: pipline to estimate dosage of each genomic region

Homepage:

https://github.com/SegawaTenta/Dosage-score

License:

GPL / GPL-3.0-or-later

Recipe:

/dosage_score/meta.yaml

Links:

biotools: dosage_score

package dosage_score

versions:

1.0.0-0

depends matplotlib-base:

depends numpy:

depends pandas:

1.5.0.*

depends python:

>=3.7

depends samtools:

>=1.16

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dosage_score

and update with::

   mamba update dosage_score

To create a new environment, run:

mamba create --name myenvname dosage_score

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dosage_score:<tag>

(see `dosage_score/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dosage_score/README.html)