recipe dr-disco

Dr. Disco: fusion gene and genomic breakpoint detection in random hexamer RNA-seq data

Homepage:

https://github.com/yhoogstrate/dr-disco

License:

GPL / GPL-3.0+

Recipe:

/dr-disco/meta.yaml

package dr-disco

versions:

0.18.3-0,  0.18.0-0,  0.16.3-0,  0.14.0-0,  0.11.0-0,  0.10.0-0,  0.9.0-0,  0.8.2-0,  0.8.0-0, 

0.18.3-0,  0.18.0-0,  0.16.3-0,  0.14.0-0,  0.11.0-0,  0.10.0-0,  0.9.0-0,  0.8.2-0,  0.8.0-0,  0.6.0-0,  0.3.4-0,  0.3.3-0,  0.2.0-0

depends click:

depends htseq:

depends numpy:

depends pyfaidx:

depends pysam:

depends python:

depends scipy:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dr-disco

and update with::

   mamba update dr-disco

To create a new environment, run:

mamba create --name myenvname dr-disco

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dr-disco:<tag>

(see `dr-disco/tags`_ for valid values for ``<tag>``)

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