recipe dragonflye

Microbial assembly pipeline for Nanopore reads

Homepage:

https://github.com/rpetit3/dragonflye

License:

GPL2

Recipe:

/dragonflye/meta.yaml

Links:

biotools: dragonflye, usegalaxy-eu: dragonflye

package dragonflye

Versions:

1.0.14-0,  1.0.13-0,  1.0.12-0,  1.0.11-0,  1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-0, 

1.0.14-0,  1.0.13-0,  1.0.12-0,  1.0.11-0,  1.0.10-0,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

Depends:

• any2fasta >=0.4.2

• assembly-scan >=0.4.0

• bwa

• fastp

• flye >=2.9

• kmc >=3.1

• medaka >=1.5.0

• miniasm >=0.3_r179

• nanoq >=0.8.1

• perl >=5.26

• perl-file-spec

• perl-findbin

• pigz >=2.6

• pilon

• polypolish

• porechop

• racon >=1.4.20

• rasusa >=0.6

• raven-assembler >=1.6.1

• samclip

• samtools

• seqtk >=1.3

• tensorflow-gpu

Required By:

• bactopia-assembler

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install dragonflye

and update with:

conda update dragonflye

or use the docker container:

docker pull quay.io/biocontainers/dragonflye:<tag>

(see dragonflye/tags for valid values for <tag>)

Download stats

Link to this page

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